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Table 1 MDA-MB-231 protrusion localized mRNA

From: Direct RNA sequencing mediated identification of mRNA localized in protrusions of human MDA-MB-231 metastatic breast cancer cells

Accession number

Name

tpm CF

tpm PF

Loc. ratio

NM_002870

RAB13

12.07

303.09

25.11

NM_006617

NESccpr

7.04

168.47

23.93

NM_001142964

C22orf46

9.05

133.83

14.78

NM_015049

TRAK2

57.33

527.45

9.20

NM_021202

TP53INP2

14.08

120.45

8.55

NM_001128128

ZEB1

39.23

329.85

8.41

NM_014631

SH3PXD2A

56.33

455.02

8.08

NM_152793

C7orf41

5.03

40.15

7.98

NM_001165966

PITPNM3

12.07

90.53

7.50

NM_014945

ABLIM3

28.16

210.19

7.46

NM_006141

DYNC1LI2

34.20

243.26

7.11

NM_002360

MAFK

21.12

148.00

7.01

NM_001161576

SAMD4A

69.40

467.62

6.74

NM_001810

CENPB

29.17

190.51

6.53

NM_001007189

C5orf53

30.17

184.21

6.11

NM_005275

GNL1

11.06

62.19

5.62

NM_006401

ANP32B

94.55

526.66

5.57

NM_145166

ZBTB47

12.07

66.13

5.48

NM_005870

SAP18

43.25

229.09

5.30

NR_024278

LOC646762

7.04

37.00

5.26

NM_001099650

GXYLT1

5.03

25.98

5.17

NM_013321

SNX8

56.33

285.77

5.07

NM_020904

PLEKHA4

5.03

25.19

5.01

NM_003628

PKP4

18.10

88.96

4.91

NM_001160184

PLEKHN1

9.05

42.51

4.70

NM_001166110

PALLD

61.36

283.41

4.62

NM_005863

NET1

338.96

1548.50

4.57

NM_001164407

TLCD2

6.03

26.77

4.44

NM_014389

PELP1

9.05

40.15

4.44

NM_201379

PLEC

30.17

133.83

4.44

NM_004050

BCL2L2

79.46

351.90

4.43

NM_032409

PINK1

179.04

784.09

4.38

NM_001312

CRIP2

42.24

185.00

4.38

NM_178313

SPTBN1

6.03

25.98

4.31

NM_006371

CRTAP

8.05

33.85

4.21

NM_003626

PPFIA1

86.50

351.11

4.06

NM_001185078

ARHGDIA

40.23

162.96

4.05

NM_203378

MB

6.03

24.40

4.04

NM_007343

PRSS3

40.23

162.17

4.03

NM_014325

CORO1C

84.49

330.64

3.91

NM_033549

TRIM41

22.13

83.45

3.77

NM_001001551

C9orf103

5.03

18.89

3.76

NM_207343

RNF214

7.04

25.19

3.58

NM_001130036

PLEKHB1

9.05

32.28

3.57

NM_001136137

RPL28

1327.68

4629.75

3.49

NM_001007073

RPL32

5.03

17.32

3.44

NM_024299

PPDPF

69.40

237.75

3.43

NM_017712

PGPEP1

51.30

174.77

3.41

NM_001130012

SLC9A3R2

236.37

802.20

3.39

NM_174971

ST3GAL3

7.04

23.62

3.35

NM_005831

CALCOCO2

11.06

37.00

3.34

NM_181718

ASPHD1

12.07

40.15

3.33

NM_002084

GPX3

77.45

256.64

3.31

NM_138392

SHKBP1

27.16

89.75

3.31

NM_024535

CORO7

5.03

16.53

3.29

NM_004834

MAP4K4

20.12

65.34

3.25

NM_016533

NINJ2

8.05

25.98

3.23

NM_002889

RARRES2

16.09

51.96

3.23

NM_024112

C9orf16

80.47

259.79

3.23

NM_145637

APOL2

16.09

51.17

3.18

NM_001128303

C13orf31

21.12

66.92

3.17

NR_001593

RPL18AP3

6.03

18.89

3.13

NM_019592

RNF20

10.06

31.49

3.13

NM_080677

DYNLL2

43.25

133.83

3.09

NM_058163

TSR2

38.22

117.30

3.07

NM_001127396

STXBP2

52.30

159.02

3.04

NM_015044

GGA2

8.05

24.40

3.03

NM_001171888

FGFR1OP2

7.04

21.26

3.02

NM_054012

ASS1

7.04

21.26

3.02

NM_002375

MAP4

180.04

542.41

3.01

NM_181509

MAP1LC3A

12.07

36.21

3.00

NM_033257

DGCR6L

12.07

36.21

3.00

NM_015683

ARRDC2

48.28

143.28

2.97

NM_001687

ATP5D

70.41

208.62

2.96

NM_015383

NBPF14

30.17

87.38

2.90

NM_001195259

LOC645781

9.05

25.98

2.87

NM_002085

GPX4

331.92

947.84

2.86

NM_003755

EIF3G

214.24

606.96

2.8

NM_181526

MYL9

44.26

125.17

2.83

NM_006166

NFYB

5.03

14.17

2.82

NM_021630

PDLIM2

5.03

14.17

2.82

NM_031286

SH3BGRL3

657.81

1853.16

2.82

NM_001018

RPS15

63.37

177.92

2.81

NM_001170931

FOXO4

9.05

25.19

2.78

NM_001167880

LHPP

18.10

50.38

2.78

NM_014994

MAPKBP1

11.06

30.70

2.78

NM_001079812

DIAPH1

61.36

170.04

2.77

NM_032488

CNFN

6.03

16.53

2.74

NM_032421

CLIP2

6.03

16.53

2.74

NM_004395

DBN1

70.41

192.09

2.73

NM_002952

RPS2

232.34

631.37

2.72

NM_001136203

CCDC124

34.20

92.11

2.69

NM_012199

EIF2C1

5.03

13.38

2.66

NM_003249

THOP1

8.05

21.26

2.64

NM_054014

FKBP1A

16.09

42.51

2.64

NM_005528

DNAJC4

19.11

50.38

2.64

NM_057159

LPAR1

58.34

153.51

2.63

NM_015493

KANK2

117.68

308.60

2.62

NM_144497

AKAP12

6.03

15.74

2.61

NM_001184942

C9orf25

12.07

31.49

2.61

  1. The 100 most localized mRNA are shown with their hierarchical order of the mRNA localization ratio (Loc ratio). Expression values are shown as transcripts per million reads (tpm) from cell body fraction (CF) and cell protrusion fraction (PF).